Daniel Panyard

icon indicating a website link https://dpanyard.github.io/

icon company Stanford University icon location PhD in epidemiology focusing on omics, statistics, bioinformatics, and complex disease/traits.

Results 3 issues of Daniel Panyard

WARN: Failed to load spectral decomposition results of the kinship matrix (.xHemi.eigen file is incorrectly reused across independent runs of rvtests)

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Hi, I've encountered a warning and error in rvtests log when I try to conduct a GWAS. My code looks like this: ``` ./software/rvtests/v2.1.0/executable/rvtest \ --inVcf ./derived_data/genetic_data/30_chr12.imputed.poly.vcf.gz \ --dosage DS...

Empty string in phenotype file not handled as a missing value

Hi, I'm not sure whether this is something to fix or something to just clarify explicitly in the documentation, but I discovered an issue while running rvtests using a space-delimited...

Use repel = TRUE when node_label= "category" for cnetplot.enrichResult

This issue is really more like an enhancement request (apologies if I didn't mark it properly), but I noticed today that when using cnetplot, the spacing of the nodes for...