Daniel Osorio

Results 11 comments of Daniel Osorio

Hi @jckkvs, thanks for using Peptides!. Each descriptor is computed as described in the documentation. Some of them are the sum, others the average or a specific formula.

Hi @jckkvs, it seems you are using the python version of the package. Please note that project is in no way not affiliated, sponsored, or otherwise endorsed by the original...

Hi @GaioTransposon, Thanks for using Peptides. Version 2.4.3 is the current one available at CRAN https://cran.r-project.org/web/packages/Peptides/index.html. Could you please try using install.packages('Peptides') in your R terminal? Please let us know...

Awesome! Thanks for sharing.

Hi @wevxman, Thanks for using Peptides, BLOSUM1 to BLOSUM10 are the (Table 5) first 10 BLOSUM62-Derived Indices reported by Georgiev, Alexander G. "Interpretable numerical descriptors of amino acid space." Journal...

Thanks for the advice. I will work on that.

Hi @jckkvs, thanks for asking. 'Peptides' is designed for linear sequences.

Hi @buzuddha, Thank you very much for using Peptides. How would you like to include the modifications? Do you know where I can find the physicochemical properties for them? Please...

Thanks to you! I can allow modifications to pass the QC of the sequences. Depending on the physicochemical properties you can provide, I can modify the functions accordingly. For example,...

Thanks! I will work on it.