PhyloSuite

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PhyloSuite not working

2

Hi, I am a new user of PhyloSuite, I tried to download nucleotide sequences from NCBI, but it does not work. The pop-up window is: The search failed for some...

Gwendoline998

运行Mafft报错

1

软件作者，你好。使用Phylosuite提取序列后进行mafft比对遇到了严重的报错（如图），以管理员身份运行Phylosuite问题也没有解决。Phylosuite版本V1.2.2，电脑的系统是Win11家庭中文版。请帮忙看下是什么情况。 

CC3729

Traceback (most recent call last): File "src\factory.py", line 683, in ctrl_startButton_status File "src\main.py", line 1763, in on_actionMrBayes_triggered File "src\main.py", line 1736, in startMB File "src\Lg_Mrbayes.py", line 243, in __init__ File...

luisfe873

系统发育中的分区模型构建问题

4

没有序列号的核苷酸序列，怎么和有序列号的核苷酸序列一起进行分区模型的构建

0749yoyo

Launch error caused by a deprecated library(Bio.Alphbet)

3

I installed PhyloSuite by `pip install PhyloSuite` and launched it by command `PhyloSuite`, but the launching has failed and I got the Error message like this: ```text Traceback (most recent...

cyclinbox

IQ-TREE建树结果问题

1

老师您好，我未能在结果中找到描述建树时的数据，请问这是在哪里可以找到，base frequencies和the gamma distribution shape parameter α 。非常感谢您！

SICHUANDengYu

下载后出现在某个文件里缺失group

2

下载后出现下列这个问题： Traceback (most recent call last): File "codes\src\factory.py", line 2089, in slot AttributeError: 'NoneType' object has no attribute 'group' 该怎么解决

SICHUANDengYu

“lmport to MACSE (for CDs)”点击“start”后出现错误

2

张老师： 您好！我在“lmport to MACSE (for CDs)”点击“start”后出现以下错误，请问该怎么处理呢？谢谢！ multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call last): File "multiprocessing\pool.py", line 119, in worker File "src\Lg_macse.py", line 60, in run File "subprocess.py", line 709, in...

Guoxiaoting1

ModelFinder报错

2

张老师： 您好！ 我在使用ModelFinder时出现报错如下，请问是什么原因？ `=============================================Commands============================================= cd /Users/linlin/Downloads/PhyloSuite_v1.2.3_Mac/PhyloSuite/myWorkPlace/GenBank_File/files/ModelFinder_results/2023_05_18-17_11_59 "/Users/linlin/Downloads/PhyloSuite_v1.2.3_Mac/PhyloSuite/plugins/iqtree-2.2.0-MacOSX/bin/iqtree2" -s "ilex.2023-05-18.r0.nex" -mset JC69,TrN,TrNef,K80,K2P,F81,HKY,SYM,TIM,TVM,TVMef,GTR -mrate E,G -nt AUTO -pre "ilex_2023_05_18_r0_nex_beast2__nuc_" ================================================================================================== IQ-TREE multicore version 2.2.0 COVID-edition for Mac OS X 64-bit built Jun...

Zeroo11

The program encountered an unforeseen problem

2

When I concatenate the alignments into the PCGs12RNA dataset, check the “Split codon” checkbox, and check both the “first codon site” and “second codon site” checkboxes ,this error appeared. PhyloSuite_v1.2.3...

YuanHuanyh