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dongzhang0725
ModelFinder报错
张老师： 您好！ 我在使用ModelFinder时出现报错如下，请问是什么原因？ `=============================================Commands============================================= cd /Users/linlin/Downloads/PhyloSuite_v1.2.3_Mac/PhyloSuite/myWorkPlace/GenBank_File/files/ModelFinder_results/2023_05_18-17_11_59 "/Users/linlin/Downloads/PhyloSuite_v1.2.3_Mac/PhyloSuite/plugins/iqtree-2.2.0-MacOSX/bin/iqtree2" -s "ilex.2023-05-18.r0.nex" -mset JC69,TrN,TrNef,K80,K2P,F81,HKY,SYM,TIM,TVM,TVMef,GTR -mrate E,G -nt AUTO -pre "ilex_2023_05_18_r0_nex_beast2__nuc_"
IQ-TREE multicore version 2.2.0 COVID-edition for Mac OS X 64-bit built Jun 1 2022 Developed by Bui Quang Minh, James Barbetti, Nguyen Lam Tung, Olga Chernomor, Heiko Schmidt, Dominik Schrempf, Michael Woodhams, Ly Trong Nhan. Host: LindeMacBook-Pro.local (SSE4.2, 32 GB RAM) Command: /Users/linlin/Downloads/PhyloSuite_v1.2.3_Mac/PhyloSuite/plugins/iqtree-2.2.0-MacOSX/bin/iqtree2 -s ilex.2023-05-18.r0.nex -mset JC69,TrN,TrNef,K80,K2P,F81,HKY,SYM,TIM,TVM,TVMef,GTR -mrate E,G -nt AUTO -pre ilex_2023_05_18_r0_nex_beast2__nuc_ Seed: 123536 (Using SPRNG - Scalable Parallel Random Number Generator) Time: Thu May 18 17:12:00 2023 Kernel: SSE2 - auto-detect threads (10 CPU cores detected) Reading alignment file ilex.2023-05-18.r0.nex ... Nexus format detected ERROR: ERROR: Error found at line 5, column 50 (file position 168): ERROR: Expecting ';' but found = at the end of FORMAT command`
估计你的NEX格式有问题
Lin Lin @.***> 于2023年5月18日周四 17:13写道：
张老师： 您好！ 我在使用ModelFinder时出现报错如下，请问是什么原因？
`=============================================Commands============================================= cd /Users/linlin/Downloads/PhyloSuite_v1.2.3_Mac/PhyloSuite/myWorkPlace/GenBank_File/files/ModelFinder_results/2023_05_18-17_11_59 "/Users/linlin/Downloads/PhyloSuite_v1.2.3_Mac/PhyloSuite/plugins/iqtree-2.2.0-MacOSX/bin/iqtree2" -s "ilex.2023-05-18.r0.nex" -mset JC69,TrN,TrNef,K80,K2P,F81,HKY,SYM,TIM,TVM,TVMef,GTR -mrate E,G -nt AUTO -pre "ilex_2023_05_18_r0_nex_beast2__nuc_"
IQ-TREE multicore version 2.2.0 COVID-edition for Mac OS X 64-bit built Jun 1 2022 Developed by Bui Quang Minh, James Barbetti, Nguyen Lam Tung, Olga Chernomor, Heiko Schmidt, Dominik Schrempf, Michael Woodhams, Ly Trong Nhan. Host: LindeMacBook-Pro.local (SSE4.2, 32 GB RAM) Command: /Users/linlin/Downloads/PhyloSuite_v1.2.3_Mac/PhyloSuite/plugins/iqtree-2.2.0-MacOSX/bin/iqtree2 -s ilex.2023-05-18.r0.nex -mset JC69,TrN,TrNef,K80,K2P,F81,HKY,SYM,TIM,TVM,TVMef,GTR -mrate E,G -nt AUTO -pre ilex_2023_05_18_r0_nex_beast2__nuc_ Seed: 123536 (Using SPRNG - Scalable Parallel Random Number Generator) Time: Thu May 18 17:12:00 2023 Kernel: SSE2 - auto-detect threads (10 CPU cores detected) Reading alignment file ilex.2023-05-18.r0.nex ... Nexus format detected ERROR: ERROR: Error found at line 5, column 50 (file position 168): ERROR: Expecting ';' but found = at the end of FORMAT command`
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好的，谢谢张老师
2023-05-18 19:10:51 "zhang dong" @.***> 写道：
估计你的NEX格式有问题
Lin Lin @.***> 于2023年5月18日周四 17:13写道：
张老师： 您好！ 我在使用ModelFinder时出现报错如下，请问是什么原因？
`=============================================Commands============================================= cd /Users/linlin/Downloads/PhyloSuite_v1.2.3_Mac/PhyloSuite/myWorkPlace/GenBank_File/files/ModelFinder_results/2023_05_18-17_11_59 "/Users/linlin/Downloads/PhyloSuite_v1.2.3_Mac/PhyloSuite/plugins/iqtree-2.2.0-MacOSX/bin/iqtree2" -s "ilex.2023-05-18.r0.nex" -mset JC69,TrN,TrNef,K80,K2P,F81,HKY,SYM,TIM,TVM,TVMef,GTR -mrate E,G -nt AUTO -pre "ilex_2023_05_18_r0_nex_beast2__nuc_"
IQ-TREE multicore version 2.2.0 COVID-edition for Mac OS X 64-bit built Jun 1 2022 Developed by Bui Quang Minh, James Barbetti, Nguyen Lam Tung, Olga Chernomor, Heiko Schmidt, Dominik Schrempf, Michael Woodhams, Ly Trong Nhan. Host: LindeMacBook-Pro.local (SSE4.2, 32 GB RAM) Command: /Users/linlin/Downloads/PhyloSuite_v1.2.3_Mac/PhyloSuite/plugins/iqtree-2.2.0-MacOSX/bin/iqtree2 -s ilex.2023-05-18.r0.nex -mset JC69,TrN,TrNef,K80,K2P,F81,HKY,SYM,TIM,TVM,TVMef,GTR -mrate E,G -nt AUTO -pre ilex_2023_05_18_r0_nex_beast2__nuc_ Seed: 123536 (Using SPRNG - Scalable Parallel Random Number Generator) Time: Thu May 18 17:12:00 2023 Kernel: SSE2 - auto-detect threads (10 CPU cores detected) Reading alignment file ilex.2023-05-18.r0.nex ... Nexus format detected ERROR: ERROR: Error found at line 5, column 50 (file position 168): ERROR: Expecting ';' but found = at the end of FORMAT command`
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