Donald Campbell
Donald Campbell
Hi! Thank you for this project @SupImDos. I'd like to +1 this request for aliases so that we could have short arguments as well. Was curious if this enhancement is...
Yes, the issue I'm running into with https://github.com/pepkit/looper/issues/270: > So, my workaround to create a temp PEP, convert to a dict, update the dict with the Looper-modified values, and then...
the project missing `sample_name`, but with `sample_table_index` set correctly, cannot run in looper
Unclear if this is actually a looper issue
the project missing `sample_name`, but with `sample_table_index` set correctly, cannot run in looper
Traceback from Looper: ``` /home/drc/GITHUB/looper/master/looper/venv/bin/python -m looper run --looper-config .looper.yaml Looper version: 1.6.0a2 Command: run Using default divvy config. You may specify in env var: ['DIVCFG'] Pipestat compatible: False Traceback...
the project missing `sample_name`, but with `sample_table_index` set correctly, cannot run in looper
the project missing `sample_name`, but with `sample_table_index` set correctly, cannot run in looper
Confirmed that the issue is here in Peppy: https://github.com/pepkit/peppy/blob/c0affde7f93ef4cb084aeec25a8d82155d35299c/peppy/project.py#L641-L661
the project missing `sample_name`, but with `sample_table_index` set correctly, cannot run in looper
After discussion, it was determined that this is something that should be solved within Peppy. We will return to using `sample.sample_name` as a way to easily identify the sample identifier...
~~Could you clarify the exact issue? It appears that the original title is not the actual issue.~~ ~~Is it ensuring all information is displayed in the terminal via logmuse?~~ ~~Running...