Domenico Simone

gt readjoiner prefilter does not filter a sequence with N

6

## Problem description `gt readjoiner prefilter` skips a sequence with a N. ## Exact command line call triggering the problem ``` gt readjoiner prefilter -des -readset input_file.set -db input_file.fasta ```...

Using multiple colors for axis ticks

2

Hi, thanks for this great package! I was wondering if it possible to use multiple colors for axis ticks (which I would use to highlight a specific row) like what...

Hi cd-hit developers, I am using your tool on metatranscriptomic data. I run the deduplication step after the quality filtering step (i.e. adapter/end trimming with Trimmomatic). Such a procedure usually...

Hi, I was wondering if, using `ktImportText`, it's possible to put a line break in a wedge label, so that instead of having `This is a very very very very...

System call for spades-core finished abnormally, OS return value: -11

6

Hello, I am using spades v3.14 in `--meta` mode. I got an error, these are the last lines in the log file: ``` 2:34:39.146 46G / 105G INFO StageManager (stage.cpp...

Output files

5

Hello, I have run SPAdes on a bunch of samples. Processes didn't return any error, but I don't get the `contigs.fasta` and `scaffolds.fasta` files in the ``, they're located in...

SchemaEvaluator: alignment file missing raising error

2

Hello, while using the SchemaEvaluator module, I got the following error: ```bash Traceback (most recent call last): File "/lustrehome/dsimone/miniconda3/envs/chewbbaca/bin/chewBBACA.py", line 8, in sys.exit(main()) File "/lustrehome/dsimone/miniconda3/envs/chewbbaca/lib/python3.6/site-packages/CHEWBBACA/chewBBACA.py", line 1414, in main functions_info[process][1]()...

Have a progressive numbering of log files.

Hello, I have got this result that puzzles me a bit, in particular that despite I have 99.51% of the reads mapped I have Coverage >= 1x equal to 0%:...

Hi, many thanks for this great package! I have a question about the y ticks. I have relatively small datasets where set sizes are < 20 and intersection sizes <...