David Oliver

The object is quite large (approximately 20Gb) so not easily shared. I will try with a smaller dataset on the cluster and if that fails, attempt to re-install the package,...

Hello, I know I never followed up on this error, and I apologize for that. Since people are still suffering I will suggest a solution, that I'm not entirely certain...

Hi Tinyi, Just glancing at the same code chunk in @kevincjnixon 's fork, I see that he has indeed corrected the export of `sample.Z.theta_n` ``` sfExport("phi", "X", "alpha", "gibbs.idx", "seed",...

```> sessionInfo() R version 4.2.0 (2022-04-22) Platform: x86_64-pc-linux-gnu (64-bit) Running under: CentOS Linux 7 (Core) Matrix products: default BLAS: /pbtech_mounts/software/spack/centos7/opt/spack/linux-centos7-x86_64/gcc-8.2.0/r-4.2.0-vhpax6qlxl2kguvqhnp4qlmbnlzdoyfv/rlib/R/lib/libRblas.so LAPACK: /pbtech_mounts/software/spack/centos7/opt/spack/linux-centos7-x86_64/gcc-8.2.0/r-4.2.0-vhpax6qlxl2kguvqhnp4qlmbnlzdoyfv/rlib/R/lib/libRlapack.so locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5]...

Hi Anastasia, The easiest way would be to clone this repo to your local computer, modify the `run_gibbs.R` as I described above (not the example from the forked project as...

Hi Anastasia, As I mentioned above, I don't have any experience working directly with snowfall package so I'm not sure what that error is from. @hannahsfuchs said that she got...

Clarification, I think that this issue only effects datasets where the celltype is only available in one subject. In the code that generates the `sigma` matrix, if dims of y...

I am also having an issue related to this. When I use `export.bw`, it consumes ~25Gb of ram and then fails to release it from memory. ``` library(GenomicAlignments) library(rtracklayer) gr

> Are you sure it's not just cached by the process? How can I check this?