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Published 20 hours ago • verified publisher icon dohlee
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The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)

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What is the format of freq-matrices of the input of prepare_frag2neighbors_and_pair2score.py?

![image](https://github.com/dohlee/chromoformer/assets/154231676/ba87f298-5a34-466f-9dc7-691bc6ecc336) What is the format of files like nij.chr1,can anyone give me a demo?

pioncasher avatar pioncasher

Replicating self-attention maps from Fig. 4a of publication

Hi, I'm trying to replicate Chromoformer's self-attention map as analysed in [Fig. 4a of your publication](https://www.nature.com/articles/s41467-022-34152-5#Fig4). The description given in the results is: > the attention weights produced by the...

Al-Murphy avatar Al-Murphy

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verified publisher icon dohlee

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The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)

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