Dmitry Manakov

Input issue

2

Hi, I have an issue with trying to load the SingleCellExperiment objects. Please check the report that uses 5k PBMC dataset from 10X: [scGSVA input issue.pdf](https://github.com/guokai8/scGSVA/files/11220624/scGSVA.input.issue.pdf) (skip to page 22...

Hello! I was trying SCEVAN on the paired samples and got multiple errors while trying to run `multiSampleComparisonClonalCN`. First, I've set up paths, load and subset my SCE: ```r library(SingleCellExperiment)...

Plotting the variant clusters from test AML data produces "The `show_guide` argument of `layer()` was deprecated in ggplot2 2.0.0 and is now defunct." error. It suggests using `show.legend` instead, but...