bern
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dmis-lab
A neural named entity recognition and multi-type normalization tool for biomedical text mining
Can we reuse crfpp-0.58.tar.gz in GNormplus to use in Tmvar,, I meant when `make install`, it wil be available already. Is there any specific reason to do the CRF again.
Hi. I use bern for finding entities in pubmed abstracts. I have two GPUS, so run two bern server on one system. Chemical, species, mutation normalizer is made with python,...
The [compressed dump](https://drive.google.com/file/d/14YrlOGd1NdDn0XD-Yat4bbq3lRv1EyqR/view) available on the [website](https://bern.korea.ac.kr/) which contains the annotations of 18.4+ million Pubmed articles has multiple duplicated entries (e.g. pmid 29422500) and incomplete abstracts (e.g. pmid 29413363) On...
## There are some articles with 'Excerpt' section, instead of 'Abstract' section. For example, these pimids, ['29787038', '30844201', '31643199', '31643392', '31643562', '31855378', '31869126']. ## Error output BERN returned the html...
Is there an easy way to turn off or not install at all some of the modules used in NER in BERN? For example, I'm only interested in drug/chemical discovery...
resources_v1.1.b.tar.gz File download is really slow in general even tho internet is not an issue. 
Hi, very nice work indeed! can you provide your tensorflow-gpu version? i encounter some problem when I try use bern. I create a new environment named bern and ```pip install...
Hello, I just wanted to inform you that unfortunately the server seems to be down.
can bern recognize cellLine entity? like pubtator https://www.ncbi.nlm.nih.gov/research/pubtator-api/publications/export/pubtator?pmids=25416956&concepts=cellline pubtator's NER accuracy for cellLine is not high, so I wonder if the accuracy of cell line entity recognition based on biobert...