bern
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dmis-lab
A neural named entity recognition and multi-type normalization tool for biomedical text mining
See below warning message dated 28 Nov 2021 10:31am HK Time `SSLError: HTTPSConnectionPool(host='bern.korea.ac.kr', port=443): Max retries exceeded with url: /plain (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has...
Hello This is actually a question not an issue I have used the code you provided and edited it minimally so it will run on colab notebook. It seems to...
Hi I am facing an error after all the installation of GNormPlusJava and tmVarJava. ps: all server running normally In the tmVar log, the error is: > Starting tmVar 2.0...
The issue is coming in this line `return requests.post(url, data={'sample_text': text}).json()` `json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)`
JSONDecodeError is raised when accessing BERN through API. This error is particularly raised when the length of the input string is of greater size. Attaching the error raised. ``` ---------------------------------------------------------------------------...
In the requirements.txt no version is specified for tensorflow (or for any other library, which is very confusing), therefore your Python scripts using Tensorflow don't work. Could you please tell...
@jhyuklee @donghyeonk @wonjininfo @seanswyi I have implemented in my local system. I often get this issue. `[03/Dec/2020 16:14:14.692631] [Thread-424] [{'error': 'NER crash'}] ` Can you help me with this error....
@jhyuklee `HTTPConnectionPool(host='164.52.196.65', port=8888): Max retries exceeded with url: / (Caused by NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused',)) ` This issues comes randomly at some time....
On scanning through the code I can see that you don't seem to be giving the sieve-based normalizer the full abstract as input, only the keyword (see [here](https://github.com/dmis-lab/bern/blob/master/normalize.py#L316-L318)). In that...
Hi, I'm trying to push my local branch "fix_post", in order to make a Pull Request, but I cannot do it due to permission errors. Would it be possible that...