David LeBauer

I removed the rows with trait_id = null ``` sql delete from covariates where trait_id is null ```

In the constraints table, it says to add the following comments: ``` sql COMMENT ON COLUMN "public"."runs"."finish_time" IS 'end of time period being simulated'; COMMENT ON COLUMN "public"."runs"."finished_at" IS 'system...

I've converted the orphaned cultivars to NULL. It will take a bit more work to sort out the orphaned sites. ``` sql update yields set cultivar_id = NULL where cultivar_id...

More sites fixed: ``` sql ## used traits table to identify site update yields set site_id = 397, updated_at = now() where id in (7580, 7581, 7582); update yields set...

no, SOM often is not included. This is "percent of mineral fraction" (mineral excludes organic) i.e. sand+silt+clay is defined as 100%

We can import this gist https://gist.github.com/dlebauer/be9eedffeadbdb71bf82 where I have standardized the city, state, and country codes (using the ArcGIS standardize addresses toolbox)

@babinecha Do you have an API Key? Try ``` Sys.getenv("ENTREZ_KEY", "") ``` And if the result is an empty string (`""`), try: - create an NCBI account (if you don't...

👋🏻 new maintainer here: package is now unarchived

This error still appears to occur in all of the examples above. Is this worth resolving? e.g. do the ncbi_* functions still provide a value, or does the [rentrez](https://github.com/ropensci/rentrez) package...

Sorry this took so long. This should be resolved in PR #132 To test it out while the PR is still open: ``` install.packages("remotes") remotes::install_github("ropensci/traits@129_ncbi_byname_error") ``` If someone checks that...