dlaydon

Hi @bwynneHEP and @weshinsley, yes you're right this does actually output the cumulative incidence. It was a quick hack that we post process in R. However you're right we should...

Yes when we do it properly, we add to the cumulative incidence at every timepoint in the State/StateT/POPVAR structures, then record the incidence in TimeSeries/RESULTS structure in `RecordSample` / `CovidSim.cpp`...

Hi @mstevens-uk, thanks for asking. We are using this code right now, but it isn't added to the formal regression tests. Therefore if you could refrain from changing or refactoring...