David Laehnemann

Absolutely agreed, that all necessary input files should be required. That was even part of the original PR that got this snippet in there, but that buggy snippet slipped through...

For anyone coming here and as long as no solution to this is merged over here, here's a quick write-down of a workaround I found: https://stackoverflow.com/a/73375434/2352071

@AntonieV and I ran into the same issue on `plot_volcano` (with the exact error message also reported in issue #230 ). It is the following setup that triggered it for...

@mschilli87 We also only call `sleuth_prep()` once and our workaround is in this script: https://github.com/snakemake-workflows/rna-seq-kallisto-sleuth/blob/0159228cf49e8a651fb69f07e83b8fa3d3f87ff9/workflow/scripts/sleuth-diffexp.R#L28-L38 The `sleuth_prep()` is run in a snakemake workflow step before that, the call is in...

Just a quick ping @warrenmcg @pimentel, in case this PR slipped by.

Have just encountered the same problem. Also, this is a duplicate of issue #135, so this issue here can maybe be closed in favour of that one?

In other projects I have contributed to (e.g. [`rust-bio`](https://github.com/rust-bio)), GitHub Organizations have been a good umbrella for multiple repositories / crates that should be developed in sync with one another---just...

I'll also ping @oddg who also created Rust bindings for the `Cbc` `C` API: https://github.com/routific/coin-or-cbc-sys I guess he might be interested in this new org, as well.

Cool. But I also think that the most important thing is that everybody with an interest in this lp modeling and solving with Rust is aware of any new efforts....

Just saw that [minilp](https://docs.rs/minilp/0.2.2/minilp/) supports the [`MPS` file format](https://en.wikipedia.org/wiki/MPS_(format)). So that would be something that shouldn't be too difficult to add or maybe simply move to a format parsing crate...