djbradshaw2

Thanks all for the responses, so this is more of a conda issue than anything with bowtie2 itself per what @cblume and @BenLangmead have said? Thank you @rpetit3 for opening...

@rpetit3 and @jmarshall thanks for the suggestions for the potential fixes. I am on a Windows Subsystem for Linux 2, so will have to figure out where those files are...

It seems like this is fixed in latest update of humann3 so it does not break things. I have not had a chance to test this out yet but seems...

@rpetit3 Honestly I have not been pursuing it, since it was fixed in the tool I was using with a work around. I thought that you and @jmarshall had a...