djbradshaw2

Thanks all for the responses, so this is more of a conda issue than anything with bowtie2 itself per what @cblume and @BenLangmead have said? Thank you @rpetit3 for opening...

@rpetit3 and @jmarshall thanks for the suggestions for the potential fixes. I am on a Windows Subsystem for Linux 2, so will have to figure out where those files are...

It seems like this is fixed in latest update of humann3 so it does not break things. I have not had a chance to test this out yet but seems...

@rpetit3 Honestly I have not been pursuing it, since it was fixed in the tool I was using with a work around. I thought that you and @jmarshall had a...

Thanks for your comment! I will test this out as soon as I can. Glad you were able to figure it out though!

Thank you for the quick response! I reran as you suggested, but it unfortunately did the same thing and stopped in the same spot. Below are the details. Please let...

My other run completed, and I was able to get all the expected outputs. So, I no longer need to restart from a killed and restarted slurm run with deleted...

No worries, can imagine you being very busy. Aye aye to keeping it open.