Dorota Jarecka

Results 58 issues of Dorota Jarecka

I would like to use both `slots` and `attributes` in one schema. I was having issue with creating `attributes` column (see linkml/schemasheets#128 ), but I found a cli option `--use-attributes`,...

enhancement
NWB-Hackathon

**Is your feature request related to a problem? Please describe.** A clear and concise description of what the problem is. Ex. I'm always frustrated when [...] We would like to...

enhancement
community-generated
NWB-Hackathon

**Describe the bug** `gen-erdiagram --format mermaid` returns invalid mermaid diagram when yaml use spaces in the name of types/variables, e.g. [here](https://github.com/biolink/biolink-model/blob/021d84ba3641f2d7745a4ec88f356a8685966bed/biolink-model.yaml#L224) in the output file you will have three elements...

bug
generator-doc
community-generated

Recently I've been testing an option to access files directly from s3 using `remfile`. [remfile](https://github.com/magland/remfile/tree/main) provides a file-like object for reading a remote file over HTTP, optimized for use with...

Addition to the `Environment` class to think in the future: - [ ] setting `setup` and `teardown` methods, possibly using `ContexMenager`, see [here](https://github.com/nipype/pydra/pull/516#discussion_r1331690829) - [ ] changing to `Dataclass`, see...

maintenance

I've been testing `kerchunk` and follow the [tutorial](https://fsspec.github.io/kerchunk/tutorial.html#single-file-jsons) to work with `h5ad` files. Unfortunately I've realized that the `json` reference file that I created with `kerchunk` will not work with...

**Is your feature request related to a problem? Please describe.** In our model we import `biolink:biolink-model`, see [here](https://github.com/djarecka/models/blob/GA_converter_tmp/linkml-schema/kbmodel.yaml#L12), since we want to use some of the classes from the biolink...

enhancement
generator-doc
community-generated

**Is your feature request related to a problem? Please describe.** A clear and concise description of what the problem is. Ex. I'm always frustrated when [...] We are working with...

generator-pydantic
community-generated

**Is your feature request related to a problem? Please describe.** It's not clear to me if I can provide any more complicated requirements for slots values, in pydantic, I could...

question
generator-pydantic
community-generated