Divon Lan

Parallel decompression of FASTQ files generated by seqkit

5

Greetings, I am the author of Genozip (www.genozip.com) - a software package for compressing FASTQ / BAM / VCF. When compressing a fastq file, Genozip first inflates the gzip compression...

Genozip (www.genozip.com, https://github.com/divonlan/genozip) is a tool for compressing genomic files, including many variations of GFF/GFF3/GTF/GVF. It has now been tested to be compatible with mirGFF3.

Error when piping in BAM data to samtools on Windows

8

Any BAM file piped into samtools on Windows results in the same error: $ cat file.bam | samtools.exe view [W::bam_hdr_read] EOF marker is absent. The input is probably truncated [E::bgzf_read_block]...