Diego Mauricio Riaño-Pachón

Dear @jltsiren , after building the graph with PGGB with multiple genome can I use VG to call variants?

Dear Sirs, I am having a similar problem. merqury is not generating plots and several of the output files do not have data/results. My assembly was generated with hifiasm 0.15.4-r347,...

Well I did to changes in the way I ran merqury that let merqury run to completion without complains, and generating all output files, including graphics. So here it is...

Hi, I am having the same problem, see error: [2019-04-08 15:34:37] root: INFO: >>>STAGE: polishing [2019-04-08 15:34:37] root: INFO: Polishing genome (1/3) [2019-04-08 15:34:37] root: INFO: Running minimap2 [2019-04-08 16:38:51]...

Thanks @fenderglass, the file is 19G, I will make it available and send a link to you. I have two different species, both gave the same error. I will share...

I suggest using https://github.com/rrwick/Unicycler, I have had success assemblying plant mitochondrial and plastid

I suggest using https://github.com/rrwick/Unicycler, I have had success assemblying plant mitochondrial and plastid

Dear Sirs, is there any planned support for OmniC data in allHiC? thanks

Hi @tangerzhang , I think I can share some data with you. I have a diploid plant that is highly het. Would it be OK if I share the two...

@tangerzhang did you have a chance to check the data that I sent? Cheers