Gaofei Zhao
Gaofei Zhao
The current generic assay APIs are not very user friendly because the only use case is cBioPortal is pulling data from them, it's not easy to get started if users...
Please using links: - https://genie-private.cbioportal.org/study/summary?id=heme_onc_nsclc_genie_bpc&enable_left_truncation=true - https://genie-private.cbioportal.org/results/comparison?cancer_study_list=heme_onc_nsclc_genie_bpc&tab_index=tab_visualize&case_set_id=heme_onc_nsclc_genie_bpc_all&Action=Submit&gene_list=TP53&comparison_subtab=survival&enable_left_truncation=true to test this feature.
Fix partial https://github.com/cbioportal/cbioportal/issues/9030 This is the algorithm part, we will get the UI part done it another PR. What is included in this pr: - Bug fix for survival calculation...
Fix cBioPortal/cbioportal# (see https://help.github.com/en/articles/closing-issues-using-keywords) Describe changes proposed in this pull request: - a - b ## Checks - [ ] Has tests or has a separate issue that describes the...
Follow up issue for https://github.com/cBioPortal/cbioportal-frontend/pull/4373
This is the follow up issue of https://github.com/cBioPortal/cbioportal/issues/9757 Proposed solution: - Change [SessionRepositoryImpl.java](https://github.com/cBioPortal/session-service/blob/master/src/main/java/org/cbioportal/session_service/domain/internal/SessionRepositoryImpl.java#L61-L69) to create that two indexes for group collection - Add documentation for existing database migration (because this...
This improves the performance by doing these: - Use `large` resource - Enable parallelism (3 parallel instances) - Separate the all-in-one validation command into individual test commands (one for each...
- [x] genie public - [x] setup api token (issue fixed temporarily by using local built docker image) - [ ] genie private - [x] convert deployment file to new...
User reports that wish to have an all-in-one solution from [docker-compose](https://github.com/cBioPortal/cbioportal-docker-compose) to deploy cBioPortal and keycloak together. If we decide to do this, we'd like to include keycloak as an...