MuSiC2
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ding-lab
identifying mutational significance in cancer genomes
Hello, We've been working on running MuSiC2 on some dog cancer samples to find significantly mutated genes. There's a couple of types of warnings we've been seeing that we'd like...
/addData01/01_Program_to_install/75.MuSIC2/joinx/joinx/build/vendor/src/gtest160/include/gtest/gtest.h:269:3: note: no known conversion for argument 1 from ‘std::basic_istream’ to ‘const testing::AssertionResult&’ make[2]: *** [build/test/lib/fileformats/CMakeFiles/TestFileFormats.dir/build.make:206: build/test/lib/fileformats/CMakeFiles/TestFileFormats.dir/TestVcfEntry.cpp.o] error 1 make[1]: *** [CMakeFiles/Makefile2:357: build/test/lib/fileformats/CMakeFiles/TestFileFormats.dir/all] error 2 make: *** [Makefile:163: all] error...
at directory of samtools1.9 # export SAMDIR=$PWD # cd ../calcRoiCovg/ # make Please define environment variable SAMDIR to point to your samtools libraries what should I do that? Thanks
root@sever:MUSIC2# music2 smg --gene-mr-file result/gene_mrs --output-file smgs --max-fdr 0.05 --processors 1 Error in read.table(file = file, header = header, sep = sep, quote = quote, : more columns than column...
Hi The MAF file contains 154 lines of content, the MAF informations are skipped.  
Hi, I'm trying to use MuSiC2 to solve the problems of interactions between mutation-related genes, but I can't use the function called mutation-relation. Will this fuction be updated?
