khmer
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Is there a way to extract kmers from abundance-dist?
For example -
cat test_hist1.txt | head
abundance,count,cumulative,cumulative_fraction
2,1,1,0.0
4,2,3,0.001
5,2,5,0.002
6,3,8,0.004
9,1,9,0.004
10,4,13,0.006
11,1,14,0.007
12,2,16,0.008
14,3,19,0.009
Here's a sample output from the abundance-dist-singles.py script. Is there a way to extract these actual kmers?
I know this has been asked before (I saw it after I posted this issue). [https://github.com/dib-lab/khmer/issues/1890]
Just wondering if there's been any progress on this. Any directions on manipulating the script files to accomplish this would be appreciated! Thanks so much.