khmer icon indicating copy to clipboard operation
khmer copied to clipboard

Is there a way to extract kmers from abundance-dist?

Open snafees opened this issue 4 years ago • 1 comments

For example -

cat test_hist1.txt | head
abundance,count,cumulative,cumulative_fraction
2,1,1,0.0
4,2,3,0.001
5,2,5,0.002
6,3,8,0.004
9,1,9,0.004
10,4,13,0.006
11,1,14,0.007
12,2,16,0.008
14,3,19,0.009

Here's a sample output from the abundance-dist-singles.py script. Is there a way to extract these actual kmers?

snafees avatar Sep 19 '19 19:09 snafees

I know this has been asked before (I saw it after I posted this issue). [https://github.com/dib-lab/khmer/issues/1890]

Just wondering if there's been any progress on this. Any directions on manipulating the script files to accomplish this would be appreciated! Thanks so much.

snafees avatar Sep 20 '19 23:09 snafees