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make preparing samples.tsv easier

Open ctb opened this issue 6 years ago • 2 comments

I spent a frustrating time debugging tabs vs spaces vs...

a few thoughts:

  • allow yaml input
  • allow csv input
  • allow excel input (??)
  • provide a utility script for checking it

ctb avatar Jan 24 '19 19:01 ctb

actually, another fun idea -- on reporting, provide an HTML output that links all the samples to their various individual outputs (orig file, trimmed file, fastqc output for either/both, etc.)

ctb avatar Jan 24 '19 19:01 ctb

yes! Been wanting this for a while. Excel should be doable, because pandas, but yaml would be nice. Also utility scripts for checking and/or converting. Need to also think about how to best enable large-scale analyses, e.g. MMETSP, where we have a large number of files that we want to assemble separately, but don't want to provide ~678 diff tsv files

bluegenes avatar Jan 24 '19 20:01 bluegenes