[WIP] add error checking for some commonly observed problems, plus test cases

Open ctb opened this issue 6 years ago • 3 comments

check for broken yaml config (no 'samples' entry) and badly formatted 'samples.tsv' (#41 is relevant).

These are common errors happening in GGG 201(b).

Mar 21 '19 16:03 ctb

@bluegenes some guidance requested - what's the right test file to add the tests to? (see tests/test_files/ for the two yaml config files I want to run as part of the tests).

Mar 21 '19 16:03 ctb

Looks like #116 addresses this too. Will have to see if there are automated tests checking the behavior; if there are, we can close this!

Mar 22 '19 01:03 ctb

grabbed the examples and added tests for them in tests/test_inputs.py. Suggest closing this one!

Mar 22 '19 05:03 bluegenes