charcoal
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organization of report directory
Could be nice if it was organized like:
report/index.html
,
report/index.ipynb
,
report/stage2.html
,
report/stage2.ipynb
report/alignments/*.align.html
,
report/alignments/*.align.ipynb
,
report/taxonomy/*.fig.html
,
report/taxonomy/*.fig.ipynb
That way, with large collections of genomes, the summary reports will be immediately available, and the alignment
and taxonomy
folders could signpost as to what they contain.
Haven't looked at the code to see how annoying this would be to change but my intuition is it would be only mildly annoying to switch over 😄