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Eukaryotic genome providing lineages?

Open ilikvlad opened this issue 3 years ago • 6 comments

Hello charcoal developers,

I am trying to use charcoal to decontaminate illumina assembly on eukaryotic genome. Charcoal needs me to provide Eukaryotic lineages (I tried using tara-delmont-provided-lineages.csv with this message too few hashes in major lineage; f_major < 20%. provide a lineage for this genome) so I assume I should provide the lineages by myself.

I couldn't find in your documentation what the lineage file should look like and what it should contain? Could you give me an advice please,

Thank you very much,

Best,

Vladislav

ilikvlad avatar Jun 28 '21 18:06 ilikvlad