dhwani2410

Maximum features used for Random forest

3

I have a matrix of 4000*1400, can I use it for classification problems using random forest?

Oncoplot showing wrong mutations compared to orignal MAF file

3

**Describe the issue** So, I have selected top genes using MutSig2CV. I am passing the top genes in the "genes" parameter of oncoplot. But the color code generated in the...

I have used this code ` library(r2d3) r2d3(data = jsonlite::read_json("flare.json"), d3_version = 4, script = "circlepacking.js") ` **But the image generated is static and I cannot zoom into circles individually**

Unable to compile xHLA

7

dhwani@dhwani-Precision-WorkStation-T7500:~/Documents/hla_scan/test_out/HLA-master/docker$ make build docker build -t docker-dev.hli.io/xchao/hla-dev -f dev.dockerfile . flag provided but not defined: -f Usage: docker build [OPTIONS] PATH | URL | - Build a new container image...

Hello, I am not clear with the input file. I have a list of biomedical abstracts which have been tokenised, lemmatized and POS tagging is done. Should the POS tagging...

Can biopert just predict the realtion using pertained models and not train as given in Biobert formula

1

I have two questions related to this:- python run_re.py --task_name=$TASK_NAME **--do_train=true** --do_eval=true --do_predict=true --vocab_file=$BIOBERT_DIR/vocab.txt --bert_config_file=$BIOBERT_DIR/bert_config.json --init_checkpoint=$BIOBERT_DIR/model.ckpt-1000000 --max_seq_length=128 --**train_batch_size=32** --learning_rate=2e-5 --num_train_epochs=3.0 --do_lower_case=false --data_dir=$RE_DIR --output_dir=$OUTPUT_DIR 1) **Can we run the prediction and...