Daniel Himmelstein

@dstillman any thoughts on this? Manubot now has a frontend developer on our team (@vincerubinetti), so it's possible we could contribute some develop efforts towards this issue.

@mrtcode this sounds like an important feature. If I understand correctly, this would be able to extract citation metadata for PDF URLs such as https://openreview.net/pdf?id=BkeCW-q6aQ. I don't understand how this...

Thanks for the info. > secondly it's an architectural choice to pass files to `recognizer-server` Lambda function We're setting up a translation-server for Manubot users as per https://github.com/greenelab/manubot/issues/82. We'd prefer...

> We're trying to use Lambda for translation-server too. Ah I didn't realize that AWS Lambda / s3 was going to become a dependency for full functionality of the codebase....

> translation-server itself still runs fine on Node, and will continue to do so. Great. Didn't realize the PDF recognition had such complexity (i.e. the separate database requirement). Perhaps at...

Awesome! Thanks @zoependlington and @matentzn for the work on this! So as per `remove-internal-xrefs.sparql`, this removes any GO, DOID, Orphanet, HP, MONDO, or EFO xrefs where the xreffed term is...

Looking at http://www.ebi.ac.uk/efo/EFO_0000181 (head and neck squamous cell carcinoma), it appears that the MeSH cross-references might be coming from Orphanet: - MESH:C535575 (Orphanet:67037) - MESH:C535575 (Orphanet:67037/e) So one question is...

> In terms of the cross-reference to a supplemental concept: I suspect the xref was added when the supplemental concept first appeared in MeSH but was later turned into a...

# EFO vs EFO-OTAR node comparison I compared `efo.owl` and `efo_otar_profile.owl` from v3.25.0 and found that EFO-OTAR adds 10 nodes and removes 57 nodes from EFO. ## Nodes added by...

Quoting @zoependlington from https://github.com/EBISPOT/efo/issues/927#issuecomment-760762229 regarding forced relationships in EFO-OTAR: > The forced relationships are defined in the subclasses templates file found in the temporary/working home of OTAR_profiler here: https://github.com/EBISPOT/otar_profiler >...