David Gault

I reran a number of the performance tests again, this time against 6.7.0. The results are again somewhat inconclusive, the PR performs very well against some datasets such as BBBC...

Thanks for reporting the bug and providing a sample file. I was able to reproduce the exception using the latest Bio-Formats release (6.3.1) and neither of the ND2 options (chunkmap...

An additional report of this issue comes from forum thread https://forum.image.sc/t/large-nd2-file-doesnt-open-negativearraysizeexception/54897. A new sample file reproduces the exception with Bio-Formats 6.6.1

Repo test failures: https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-test-folder/lastFailedBuild/consoleFull

Hi @naomicxia, thanks for opening the issue. This appears to be a new issue which we have not seen reported before, do you see the issue consistently with all your...

The same issue ([WARN] No pixel blocks for plane #999 and above) has also been reported in https://forum.image.sc/t/problems-opening-olympus-oir-files-using-bio-formats/24747. A sample file has also been provided in that thread which I...

A proposed fix for this has been opened in https://github.com/openmicroscopy/bioformats/pull/3349

This has caused changes to many existing files (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-test-folder/62854/consoleFull), many of those using `ms` are likely to be correct and worth updating. Some have updated to `min` which needs further...

Thanks @yichechang for reporting your issue. Retesting with the original sample dataset and it appears as though the original exception was resolved with the Bio-Formats 6.9.0 release. So any version...

Thanks for the feedback @yichechang, glad to hear the upgrade worked. It does sound like the CellProfiler issue is likely the same bug, it may be worth reporting to the...