Damian Fermin

PhilosopherFilter error: "Cannot read file. Error parsing, exit code: 1"

3

Hello I'm running Philosopher as part of Fragpipe. While running my workflow I get an error about a single mzML file: ``` PhilosopherFilter [Work dir: /home/dfermin/projects/glycoMS/fragPipeWork/out/F20230904_1026] /usr/local/a2idea/apps/fragpipe/tools/philosopher_v5.1.0_linux_amd64/philosopher filter --sequential --prot...

Error in rule MonoallelicExpression_pipeline_QC_create_matrix_dna_rna_cor_R:

4

Hello. The DROP pipeline is working as expected until rule MonoallelicExpression_pipeline_QC_create_matrix_dna_rna_cor_R. There I encounter this error: ``` Error in reducer$value.cache[[as.character(idx)]] .collect_result -> .reducer_add -> .reducer_add In addition: Warning message: In...

Error running SCD_qc

2

Hi I'm trying to use SCDC on my data set but keep getting an error at the single cell QC step. ``` res_qc scrna ExpressionSet (storageMode: lockedEnvironment) assayData: 21375 features,...