Devon O'Rourke
Devon O'Rourke
Just ran `git pull origin master` and saw this: ``` [devon@premise racon]$ git pull origin master remote: Counting objects: 9, done. remote: Total 9 (delta 7), reused 7 (delta 7),...
I take it _run polishing again_ means just run the whole thing over?
Got it. Will send you an update. Many thanks for the promptness!
Odd observation - the previous version was able to load all the overlaps with less than 450 G of memory. It's crashing now before the overlaps are finished. Did memory...
Not clear if it's truly a memory issue, but I think so. I was watching `top` as Racon completed it's first two tasks to load target sequences (draft assembly?) and...
I wonder about the `racon wrapper` option... What's the disadvantage of breaking up there polishing into chunks? Less effective? I had to do this with `pilon` so perhaps I'll have...
Reads (tmp.fq) = 114 G Draft (contigs.fasta) = 1.9 G Mappings (.sam) = 176 G On Mon, Sep 3, 2018, 1:53 PM Robert Vaser wrote: > What are the file...
Okay, good to know. I can request up to 990 Gb of RAM at the moment, so that's what's currently waiting in queue. I just wondered if I was doing...
Unfortunately the 1Tb node we have on our cluster continues to be occupied by another job. While it was waiting, I reinstalled Racon `1.3.1`; `git log` sugggests the last commit...
Hi Robert, Thanks for the reply. I think one of the things that was tripping me up was how to view the `.log` file. I have been viewing the contents...