Devon O'Rourke

I think so; here's what has been reported to my tmux window so far: ``` [racon::Polisher::initialize] loaded target sequences [racon::Polisher::initialize] loaded sequences [racon::Polisher::initialize] loaded overlaps ``` Would it be much...

Well two cheers for you for creating such a great tool, but three cheers when you've finished that timestamp issue! Quick question from a recent issues post [93](https://github.com/isovic/racon/issues/93) - can...

Sounds great; appreciate your feedback

@nicolasalexandre21 - make sure you include those two `#SBATCH1 lines in the top of your script and you should split up the `.log` file information from the resulting polished `fasta`...

I just pasted from your note above. It's a one liner. You putting together a whale?

Find me on Twitter if you want to follow up: `@thesciencedork` Interested to hear what other folks are up to in using these tools.

@nicolasalexandre21 - I had to modify the `log` file to avoid the Windows-style line terminators. Maybe Robert has a savvy way of avoiding this little one liner, but it's what...

Version 1.3.1 Using Nanopore assembly (assembled by Flye) with 150 PE Illumina data for polishing. I mapped reads with minimap. The command: ``` RACON=/mnt/lustre/macmaneslab/devon/bin/racon DRAFT=/mnt/lustre/macmaneslab/devon/batgenomes/assembly/flye/myse/rough/contigs.fasta OVERLAPS=/mnt/lustre/macmaneslab/devon/batgenomes/alignments/myse/minimap2/SE4racon.sam $RACON --threads 24 tmp.fq...

Yep, that's exactly what I did to identify the version. Please let me know what other info to give you. Thanks again On Wed, Aug 29, 2018, 4:15 PM Robert...

This what you're looking for? ``` commit 57aabc5366e30be8ebe9e13d71824af91b9b9cba Author: rvaser Date: Mon Apr 23 22:04:31 2018 +0200 ``` On Wed, Aug 29, 2018 at 4:50 PM Robert Vaser wrote: >...