Quang Nguyen

Hi @Tenrolf -- How did you assess to detect that the issue was because of the normalisation distorting the data? Would you mind showing the bit of codes you used...

Thank you @ghar1821 for your input! 1. Would you mind giving me more guidance on how to increase the grid size? 2. To `run.phenograph`, do I simply run it in...

Thank you @ghar1821 for your response! For question 3, basically I have 3 sets of markers (backbone markers, strict_markers, and relax_markers) that I want to use to do the clustering...

Hi @tomashhurst -- That would be very useful if I could have the script for the multi-level clustering when you get a chance? Also @ghar1821 and Thomas, in `CATALYST` (https://bioconductor.org/packages/release/bioc/vignettes/CATALYST/inst/doc/differential.html),...

Hi @tomashhurst - I hope all is well, and thanks for your help earlier. I wonder if you would not mind emailing me the script you mentioned for the multi-level...