DENG Ziqi

there are conficts with the main branch with big change. Consider discussion and temporary use `--tools-dir` as experimental solution

#368

I'm afraid that I am not able to reproduce the error you had, would you like to provide more information including the ete version you were using?

Hi, yes, the reason of this error is you selected `cog_all` as cogselector, which means it all COGs from your file will be used. And if one of you COG...

Hi @magibc, I have tried the sample data that you showed, it works well except I have to correct the text format of coglist.txt. Please make sure each line of...

> I added some more info here: [OpenTreeOfLife/feedback#545](https://github.com/OpenTreeOfLife/feedback/issues/545) > > You can grab the tree from: https://tree.opentreeoflife.org/opentree/default/download_subtree/ottol-id/801601/Vertebrata > > I tried a very simple example tree: ((Dendromus_ott254739,Malacothrix_typica_ott600700)'Malacothrix (genus in Opisthokonta)...

Hi, I tried the code you demonstrated and seems fine, I wonder if it could be the version issues. Mine is: ete3.1.2 python 3.6.10 & python3.7 > In [1]: from...

sorry for the delay, hope it helps. https://groups.google.com/g/etetoolkit/c/_I84g4uCqJE

Hi, the upgrade-external-tools command is very outdated. If you need to install the external tools, I recommend you to install them via conda `conda install -c etetoolkit t_coffee`

> Thank you for your reply. > Is there a way to solve it without using conda ? yes but it would be a bit complicated. Once you install all...