dejsha

weighted Jaccard together with full hash sets - zero genome sizes

1

Hi, I was trying to use Dashing (Dashing version: v0.5.7b, downloaded May 2021) to estimate similarities between metagenomic assemblies (ie. each sample was represented by a set of Metaspades scaffolds)....

how to get assymetric matrix for containment index?

2

Dear Daniel, (first thank you very much for new binaries which emit distances with --set /--countdict, it works perfectly.) Could you please help me with another issue - the containment...

--mash-distance outputs similarity with --set option

3

Hi, with version 2.1.9 binaries, I keep getting similarity matrix instead of distance matrix when using: ./dashing2_s128 sketch --cmpout distance.txt -F paths.txt -p16 -k31 --set --mash-distance I.e. the distance.txt output...