deeptime

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Add optional dependency to pint for units

clonker

Sort Markov matrix

21

**Is your feature request related to a problem? Please describe.** I am doing Markov modelling for SAR/QSAR analysis of chemical compounds and would need sorted markov matrices. I suggest to...

cap-jmk

Installation runs into CUDA problem

12

The bug reported at https://github.com/rusty1s/pytorch_sparse/issues/180 and https://github.com/pyg-team/pytorch_geometric/issues/4095 propagates to deeptime, too. Fixing PyTorch to older versions in the setup might help.

cap-jmk

It should be possible to implement the CK-test based on `KoopmanModel`s and not only `CovarianceKoopmanModel`s.

clonker

clonker

serialization

1

consider using pydantic

clonker

brookehus

Feauture request - Tcorex covariance matrix

1

Hi All! love the libray so far. I was wondering if I could request a feature request of adding the calculation of the covariance matrix by this method below. https://github.com/hrayrhar/T-CorEx...

andrewczgithub

To current PyEMMA API

brookehus

Consider implementing an orthogonal package for chunking and streaming tools

brookehus