Denes T
Denes T
Hi, Thank you for developing this great library! I have a question about dealing with missing values. See below an example: ```{python} import json from urllib import request from glom...
Hi, If I run `font_import`, after scanning all the directories, it fails with the following error: ``` Found FontName for 5044 fonts. Scanning afm files in /usr/lib/R/library/extrafontdb/metrics Error in if...
Add 4 new columns to the output of the interactions query: evidences (resource:reference tuples) for 1) undirected, 2) directed, 3) activation, 4) inhibition. This is required for a better interoperability...
Would be useful to have an attribute for each of the original resources (or evidences within them) showing the type of the evidence behind the database records: literature curated, high-throughput...
At some point we should run `cProfile` for all the main database classes and also the `utils.mapping`. Also we should inspect the memory usage. We should take care especially about...
Add a database (tsv, json or sqlite) to the cache where we maintain a record of the last download date and the URL of each file in the cache. The...
At the momet the log is too verbose. A verbosity level should be assigned to each log message, which is the second argument of the `_log` method, e.g. `self._log('message', 1)`....
We process PhosphoSite from two sources: the tabular and the BioPax. The former does not contain references, the latter we don't extract the PTMs from. We should use only the...
-- The pre-processing of network data should be organized in a separate module. -- Here we should have classes which are responsible for processing an entire dataset, one line and...
Hi Ilya, Thanks for creating this great tool, I really like the concept and I think this tool is gap filling as most of the free open source molecule drawing...