deearahman

Hi Kelly, Thanks for you reply. I re-downloaded the genbank file and that solved the biopython issue. But I am still getting this warning [common@t7920 RedDog_v0.4.8]$ rubra RedDog --config k1locus_config_massive.py...

Sorry for the late reply. here's a log file, there are more log files. I have tried bowtie2 and bwa it works fine. [pipeline.log](https://github.com/katholt/RedDog/files/5774626/pipeline.log) I re-installed again the RedDog_v1b11 but...

Hi Kelly, Just to let you know I have rectify the problem and it was due to different version of samtools that didn't allow the bam files to be generated....