Santhilal Subhash comments

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                                            Santhilal Subhash

IntegrateData error: number of items to replace is not a multiple of replacement length

I got the lowest cell number "3770" for a smaller object. It is same error. tried playing with different parameters `k.filter`, `k.anchor`, `k.score`, no luck so far.

Can't find BisulfiteCountVariant Walker

I am having same issue. Please help. ``` ##### ERROR ------------------------------------------------------------------------------------------ ##### ERROR A USER ERROR has occurred (version 3.8-1-0-gf15c1c3ef): ##### ERROR ##### ERROR This means that one or more...

Can't find BisulfiteCountVariant Walker

Hi massfl, I started using BS-SNPer, that serves my purpose. https://github.com/hellbelly/BS-Snper Also the developer of the tool is superfast in responding to the queries. Developer’s contact: Shengjie Gao

Can't find BisulfiteCountVariant Walker

Hi @insectopalo , yes it accepts Bismark aligned sorted and indexed BAM files as input.

Can't find BisulfiteCountVariant Walker

Hi, Unfortunately, it looks like the authors don't maintain this tool anymore. Have a look at above mentioned BS-SNPer tool and check if it helps.

Cannot run genscf with a locally constructed database for E. coli

Sorry for my very delayed response. To accommodate '`-org=eco`' you must have directory `$GeneSCF_source_DIR/class/lib/db/eco/GO_BP_sym.txt`. I hope this works.

Not working with either GO or KEGG dbs

Please provide your input gene list to reproduce the error.