Deanna Church

Update to this. I'm parsing a clinvar file now and got this error: `HGVSParseError: NM_007194.4(CHEK2):c.1135_1136TC[2]: char 32: expected the character '='` I checked the recommendations and the c.1135_1136TC[2] looks ok...

Another ClinVar failure. Parsing this variant: NM_007194.4(CHEK2):c.3G>T To get the protein variant, hgvs returns this: NP_009125.1:p.Met1? But, it should be: NP_009125.1:p.Met1Ile (from ClinVar)

Thanks for the update. It would be useful then if the code returned something more useful. When I try to pull information on the protein I get an exception rather...

I get it- and I can work around now. Thanks for the hard, unpaid labor here!

I think returning an error is the right thing. Returning nothing is too ambiguous. Having queries that are out of bounds (or inconsistent with the assembly structure- i.e. in gaps)...

I appreciate the difficulties of implementing error conditions, and having them be consistent. I do think it is important to identify states that are truly errors (running off the end...

Hi Reece, Thanks for the update. It turns out my bigger problem is that I need to project alignments onto NM_001257387.2, which does not seem to be in 37, only...

Thanks Reece- appreciate the rapid response on the update.