Derek Croote

Closes #64

fix: update cuda image in README

1

Fixes #805. This PR is based on [this comment](https://github.com/google-deepmind/alphafold/issues/805#issuecomment-1661283794) and is slightly more future-proof than #700 as images now have DIST appended e.g. `nvidia/cuda:11.0.3-base-${DIST}`. Note that the DIST itself does...

fix: cargo clippy

1

No material changes - just applied clippy recommendations

Add option to skip transcriptome quantification

4

For those interested in only the assembled sequences, this option can substantially reduce runtime by skipping the Kallisto build transcriptome index step. Note Kallisto is still used so as to...

Testing - CI?

1

Is there interest in setting up continuous integration for testing BraCeR output? [Travis builds can run Docker images](https://docs.travis-ci.com/user/docker/), for example, which would make implementation easier. As a first step testing...

Add svgo to devDependencies and avoid removing viewBox

2

I thought this would help per the [instructions in CONTRIBUTING.md](https://github.com/duerrsimon/bioicons/blob/main/CONTRIBUTING.md#how-to-add-new-icons-via-pull-request). Note I didn't add `svgo-viewbox` because whenever I used it with an Inkscape image it would botch the size /...

Rename, archive, and drop hosting

2

https://api3workspace.slack.com/archives/C01N6001YCE/p1721838165339709 Since these docs are now support only old legacy versions of services (e.g. Airnode version