Derek Croote

I agree that filtering is useful and agree that we would want to demonstrate that ignoring the transcriptome doesn't affect recombinant selection. To verify this I've created a test where...

@rahul-thakoor - what do you think about approving this, merging, and then releasing a new version?

This may have to do with the `IGDATA` environment variable being exported by a Dockerfile `ENTRYPOINT` script: https://github.com/Teichlab/bracer/blob/131c2b9a90cef87ea7afd7c47227852d822537a9/Dockerfile#L72 Try exporting `IGDATA` prior to running `bracer assemble`: ```bash export IGDATA=/ncbi-igblast-1.4.0/bin &&...

This appears to be solved with feba77db91d21504dcd2fca887f2cbafa777b36c. Installing polo [from this repo](https://stackoverflow.com/questions/15268953/how-to-install-python-package-from-github) rather than pip works successfully in python 2.7.

The "ideal solution" is possible if **snakemake** is used to create the conda environments in the correct working directory when the Docker image is built. The key phrase in the...