Daniel Lea

Can't execute workflows using podman

3

# Description Using `stage` I can stage a workflow with podman. However running the workflow with `staged-workdir offline-exec` I get the following error: ``` ERROR Workflow error: Docker is not...

PermissionError: [Errno 13] Permission denied: '/home/ansible/wfexs-backend-test/wf-cache'

3

# Description When staging a workflow for the first time as non-sudo/root user I'm getting the error in the title. Oddly, deleting the cache dir and re-running the `stage` command...

Secrets/secret inputs

2

# Background My team would like to use WfExS in Trusted Research Environment (TRE) which has data sources which can't be exposed to the outside world. We anticipate that the...

Error while running WfExS using a local workflow file/directory

7

# Description I am running WfExS with the config files shown below. When I run `WfExS-backend.py -L local-config.yml stage -W test-stage.yml` I get the following error: `NotADirectoryError: [Errno 20] Not...