isolator
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dcjones
Rapid and robust analysis of RNA-Seq experiments.
I was wondering if you would you be able to provide a Linux executable? I do not have permission on my cluster to 'make' stuff. I am on Scientific Linux...
Isolator looks like an interesting new approach, but most of my experiments cannot be described simply as disjoint groups of samples. Almost always, there are one or more other factors...
I am getting the following error when running **isolator summarize transcript-expression isolator-output.h5** HDF5-DIAG: Error detected in HDF5 (1.8.17) thread 140400618481472: #000: H5F.c line 604 in H5Fopen(): unable to open file...
I do not know how to post a issue, so I paste the code here. Hope you can help me. ` >isolator analyze -o xxx.hdf5 -g mm10.fa -p 4 RefSeq_Genes_mm10.gtf...
I'm starting to use isolator. Here I have a few questions: what are up_pr down_pr and median_change mean in the tsv output files? If I only export the gene expression...
Hi, thanks for isolator! I started playing around and it seems very useful! I try to unterstand the different summarize functions. My samples.yaml looks like this: ``` KO_young: RE_8wks_KO_01: bam/RE_8wks_KO_01.bam...
Hi, While running isolator we have observed that in the optimization and sampling stage of the tool it is exhaustively using all the threads available in the system bypassing the...
Hi @dcjones, We are interested in using isolator for our analysis but due to some reason, it is segfaulting with the attached data. [testData.tar.gz](https://github.com/dcjones/isolator/files/687830/testData.tar.gz) Following is the backtrace from gdb...