Dan Browne

A feature suggestion for the future is to have BESST output the scaffold graph in the GFA format, along with the Fasta and AGP files. It would be very nice...

Miniasm not making it past Step 1

2

Hello, I'm trying to assemble some reads with minimap and miniasm. Minimap seems to have worked, but my process is failing on miniasm: ``` [M::mm_idx_gen::0.010*2.97] collected minimizers [M::mm_idx_gen::0.022*2.77] sorted minimizers...

NameError: global name 'refFileName' is not defined

4

Hello, I'm trying to run a multiple genome alignment with the following parameters: ``` runProgressiveCactus.sh SEQUENCE_FILE_v2.txt ./CACTUS_v2 ./Chlorophyta_v2 \ --maxThreads 20 --root Chlorophyta ``` And the following sequence file: ```...