Daniel Brami

I'm getting the same error while trying to extract SNPs from MAFFT alignments of coronavirus, courtesy of GISAID ```bash (pangenomics) ubuntu@ip-172-31-29-49:~/covid19/vcf$ snp-sites -v -o GISAID0201 ../gisaid_hcov-19_2021_01_30_08.fasta.gz Alignment ../gisaid_hcov-19_2021_01_30_08.fasta.gz contains sequences...

Sanger iInstitute doesn’t support this software and its the bug fix anymore and original authors left so no issue resolution in sight. On Wed, Mar 24, 2021 at 9:08 AM...

Hi all, Any plans to pick this up again? Or is all attention going strictly to LLM support?

@totalhack I'm running into the same scenario and trying to figure out if I should do something like you or use MLJAR as a "heuristic" to identify best model and...

seems like a really trivial bug to fix; is anyone working on it? I cant use PyCaret until this gets sorted. PS: scikit-learn is at version 1.4.2 today

Sure. Uploading my ipynb and data [Archive.zip](https://github.com/mljar/mljar-supervised/files/10170309/Archive.zip)

Hi Pavel, Any luck?

Could you elaborate please? I would just: - set all the needed AWS OS environment variables you listed - use cyvcf2 as so: ``` from cyvcf2 import VCF for variant...

Hi, The proposed solution does not seem to work. Did i miss something? ``` (base) ➜ AncestryML git:(main) ✗ export AWS_ACCESS_KEY_ID=ABCDE... (base) ➜ AncestryML git:(main) ✗ export AWS_SECRET_ACCESS_KEY=DEFGH... (ML) ➜...

Thanks for response. 1. If I have technical replicates and wish to add more depth before variant calling, I would want to combine the aligned BAM files. I’m asking if...