Dmitry Bolotin
Dmitry Bolotin
Linked to the full featured #186, but much simpler to implement, and should satisfy most part of demand for this functionality.
https://github.com/milaboratory/mixcr/blob/041862c395ebde869bd4a444fe83f1de9676a966/src/main/java/com/milaboratory/mixcr/vdjaligners/VDJCAlignerPVFirst.java#L100
Simultaneous analysis of several samples Align individual samples: ``` mixcr align sample1_R1.fastq.gz sample1_R2.fastq.gz alignments1.vdjca mixcr align sample2_R1.fastq.gz sample2_R2.fastq.gz alignments2.vdjca mixcr align sample3_R1.fastq.gz sample3_R2.fastq.gz alignments3.vdjca ``` Assemble clones from all samples...