Davi Sidarta

Add support for monocle3 trajectories in 2D and 3D

2

Hi @romanhaa! Once again, thank you for providing such a great interface for the single-cell community in R. I particularly appreciate the fact that Cerebro uses plotly to generate the...

Error when Using ROC test for Marker Genes

1

Hi @romanhaa ! Thanks again for the great app! It's truly useful. I'm having a issue when trying to use ROC test to get marker genes: ``` Error: Can't subset...

error : $ operator is invalid for atomic vectors

8

I've been trying to run Dyno so as to proceed to lineage inference from a public dataset. I've done the preprocessing to reshape de data to the required input format...

group.marker selection criteria

7

Hello Xuran! Thanks for your great package! I've been able to run MuSiC cell type estimation analysis on my data of interes (brain). However, several cell types are very transcriptionally...

How to set adequate kernel bandwith

1

Hello, I'm trying to use your C++ implementation of Diffusion Maps with some of my data, which is really big (37k x 60k matrix). In readme you select the kernel...

More documentation?

1

Hi! I found this package spetacular! The main characteristic that draw my attention is the accurate visual illustrations of the LR interactions. Where can I find more documentation to apply...

Is density normalization applied to the kernel?

5

Hi, I would like to know if the parameter density_norm represents a choice to wether normalize or not the Gaussian kernel. I'm particularly interested if this is the case because...

Passing kNN distances or graph as input?

1

HI! Thank you for this fast and powerful package. Its concepts towards optimization are novel to DR and I really enjoyed your paper. I have a question: is it possible...