davidreydellet

Hello Remi-Gau, Thanks for your answers. I am actually a bit unsure how to share this mock dataset but here is the script: ```matlab % SPMup BIDS_dir = '/users/davidreydellet/mock_datasets/raw/'; %...

Thank you for developing this tool and following its implementation! I checked a bit, at this stage (run_spmup_bids L168), the variable subject_sess does contain filenames but I presume some are...

So actually, line 256 of _spmup_BIDS_1rstlevel_: ```matlab [filepath,filename,ext]=fileparts(matlabbatch{1}.spm.stats.fmri_spec.sess(frun).scans); ``` `matlabbatch{1}.spm.stats.fmri_spec.sess(frun).scans` is a cell, which doesn't fit the correct format for the function _fileparts_. It seems to work if I modify...

The first 7 subjects of my dataset got processed with this modification but an error appeared at subject#7. I will try to sort out this error now. ``` ------------------------------ running...

Indeed, in this loop going through all ROIs, when it comes to roi 5, tmp is filled with NaNs and subsequently becomes 0, hence the error with the corr function....