Dave Ross

I am having some performance issues with multiscale labels in direct color mode with my application and on Zulip @jni directed me to this PR in progress. I tested my...

> This works quite nicely for me locally! > While you have this PR open, can you also fix the example that the issue refers to? Thanks for checking it...

> Vignettes do not explain or give a reference to CosMx. Please give scientific role of the package/technology in the vignette introductions so that newcomers are given context. Hi @vjcitn,...

> Bioconductor packages use SummarizedExperiment or related classes whenever possible to help bind metadata about experiments and features right to the numerical quantifications. Please consider adopting this discipline. I've opened...

With [this PR](https://github.com/Nanostring-Biostats/InSituType/pull/178) I added the option to use a `SingleCellExperiment` class object with the core package functions `insitutype` and `insitutypeML` and to retrieve the counts matrix from that object....

Hello @vjcitn and @lshep, with Bioconductor Release 3.16 just ahead, how can we move this forward in the review process? Thanks!

I got the same issue running the example [here](https://ome-zarr.readthedocs.io/en/stable/python.html#writing-ome-ngff-images). I had `fsspec 2023.9.0`, running `pip install fsspec=="2022.2.0"` resolved the issue. Thanks.

> I only have a minor question which is that it seems a bit pointless to reset the blank value to `None` instead of always using the empty list? ie...

@Carreau @jni After some further reflection I'm not sure whether [napari/napari-console#18](https://github.com/napari/napari-console/pull/18) will solve the issue that led me to create this PR. For my napari plugin when you drag a...

Added description for when creating a weakref fails, also made suggested updates. In addition on further reflection removed special handling for list objects because if a list or tuple is...