David Studholme
David Studholme
No, I don't recall seeing anything about this since I reported the issue.
I tried to replicate this issue. If I point a web brower at https://github.com/ParBLiSS/FastANI/releases/tag/v1.1/fastani-OSX64-v1.1.tar.gz I get "This site can’t be reachedThe web page at https://github.com/ParBLiSS/FastANI/releases/tag/v1.1/fastani-OSX64-v1.1.tar.gz might be temporarily down or...
However, if I click on the link to https://github.com/ParBLiSS/FastANI/releases/tag/v1.1/fastani-OSX64-v1.1.tar.gz in my previous comment, then it works just fine. Also, pointing browser at https://github.com/ParBLiSS/FastANI/releases/download/v1.1/fastani-OSX64-v1.1.tar.gz works just fine too and downloads the...
OK, I resorted to going in and editing the code of phame lines 157 and 158: ``` parse_version( 'samtools --version', 1.15, qr/samtools\s(\d+\.\d+)/ms ); parse_version( 'bcftools --version', 1.15, qr/bcftools\s(\d+\.\d+)/ms ); ```...
@mshakya. thanks for the reply. Yes, I am using the version installed via conda. I can provide paths, version numbers etc. if required.
I have not tried it yet. I thought it better to wait until the release of DENTIST that has these issues resolved.
This is what happened. I have not yet tried v2.0.0. Will try that next. ``` (base) ubuntu@bio-xanthomonas:~/dentist-example$ snakemake --configfile=snakemake.yml --use-singularity --cores=all Pre-fetching singularity image... Building DAG of jobs... Updating job...
I would like to try your suggestion of using v2.0.0. However, it is not clear how to achieve that. I first removed the cached version of DENTIST in order that...